MidAtlantic Bioinformatics Conference
Friday, October 4, 2024
Agenda
Schedule is Eastern time zone.
Times are tentative, will confirm closer to conference date.
8:30am
Introduction by Conference Chair, Mingyao Li, PhD
Welcome
Bo Li, PhD
Conference Co-Chair, Associate Professor, Children's Hospital of Philadelphia, University of Pennsylvania
Marylyn Ritchie, PhD
Executive Director, Penn Institute for Biomedical Informatics
8:45am- 9:30am
Keynote Speaker introduction by Marylyn Ritchie, PhD
Classifying tumors and predicting patients response from the pathology slides
Eytan Ruppin, PhD
Chief, Cancer Data Science Laboratory
Head, Computational Precision Oncology Section
National Institutes for Health National Cancer Institute
Center for Cancer Research
9:30am- 10:00am
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Computing the human interactome
Qian Cong, PhD
Assistant Professor, Eugene McDermott Center for Human Growth and Development
Southwestern Medical Foundation Scholar in Biomedical Research
UT Southwestern Medical Center
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10:00am- 10:15am
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Morning Break
10:15am- 10:45am
Targeting Hidden Drivers toward Precision Oncology
Jiyang Yu, PhD
Associate Member, St. Jude Faculty
Interim Chair, Department of Computational Biology
St Jude Children's Research Hospital
10:45am- 11:15am
New insights into the genetic & epigenetic variation of complete human centromeres
Glennis Logsdon, PhD
Assistant Professor of Genetics
Core Member, Epigenetics Institute
University of Pennsylvania
Perelman School of Medicine
11:15am- 11:45am
Poster Lightning Round (3-minute Flash Presentations)
1. Shovan Bhowmik - University of Delaware
2. Ian Chen - Children's Hospital of Philadelphia
3. Pavel Kuksa, PhD - University of Pennsylvania
4. Athylia Paremski - Children's Hospital of Philadelphia
5. Colette Trouillot, MS - Drexel University
6. Jonathan Perdomo - Children's Hospital of Philadelphia
7. Yuhao Tan - University of Pennsylvania
8. Akshatha Nayak - Penn State University
9. Jing Hu, PhD - Children's Hospital of Philadelphia
10. Michael Troka - University of Pennsylvania
11. Christopher Sottolano - Children's Hospital of Philadelphia
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11:45am- 1:45pm
2:00pm- 2:45pm
Keynote Speaker introduction by Yi Xing, PhD
Epigenetic and 3D Genome Alteration in Cancer
Feng Yue, PhD
Director, Institute for Artificial Intelligence in Medicine
Center for Advanced Molecular Analysis
Duane and Susan Burnham Professor of Molecular Medicine
Professor of Biochemistry and Molecular Genetics and Pathology
Northwestern University Feinberg School of Medicine
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2:45pm - 3:15pm
3D mapping of human pancreatic tissues reveals marked structural, genomic, and immune heterogeneity
Ashley Kiemen, PhD
Assistant Professor, Pathology
Johns Hopkins Institute for NanoBio Technology
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3:15pm - 3:30pm
Afternoon Break
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3:30pm - 4:00pm
Robust Mendelian Randomization Coupled with AlphaFold3 for Drug Target Discovery
Zhonghua Liu, PhD
Assistant Professor, Biostatistics
Mailman School of Public Health
Columbia University Data Science Institute
4:00pm - 4:30pm
Bridging H&E/IHC and multiplex images for research and clinicla deployment
Saad Nadeem, PhD
Assistant Attending Computer Scientist
Memorial Sloan Kettering Cancer Center
Departments of Medical Physics and Pathology
Assistant Professor, Applied Mathematics & Statistics
Stony Brook University
4:30pm- 4:45pm
Closing Remarks and Presentation of Trainee Awards
Mingyao Li, PhD
Professor of Biostatistics
Chair, Graduate Program in Biostatistics
Member, Graduate Group in Genomics and Computational Biology
Dept. of Biostatistics, Epidemiology and Informatics
University of Pennsylvania